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Last Updated: December 18, 2025

Patent: 6,921,659


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Summary for Patent: 6,921,659
Title:Protease-deficient cells
Abstract:A gram-negative bacterial cell is described that is deficient in a chromosomal gene present in a wild-type such cell which gene shares at least 80% sequence identity with the native sequence of the yfcK gene and encodes an aminopeptidase. Alternatively, a gram-negative bacterial cell is deficient in a chromosomal gene present in a wild-type such cell which gene encodes an aminopeptidase that shares at least 80% sequence identity with the native sequence of aminopeptidase b2324. Either of these types of cells, when comprising a nucleic acid encoding a heterologous polypeptide, produces an N-terminal unclipped polypeptide when it is cultured and the polypeptide recovered, with virtually no N-terminal clipped polypeptide produced as an impurity. Conversely, a method is provided for cleaving an N-terminal amino acid from a polypeptide comprising contacting the polypeptide with an aminopeptidase sharing at least 80% sequence identity with the native sequence of aminopeptidase b2324.
Inventor(s):John C. Joly
Assignee:Genentech Inc
Application Number:US10/243,789
Patent Claims:see list of patent claims
Patent landscape, scope, and claims summary:

A Comprehensive and Critical Analysis of the Claims and Patent Landscape for United States Patent 6,921,659


Introduction

United States Patent 6,921,659 (hereafter, "the ’659 patent") encompasses innovations pertinent to biopharmaceuticals, specifically in the domain of recombinant DNA technology and therapeutic proteins. Originally granted to Genentech Inc., the patent marks a significant milestone in protein engineering, offering protections that have profoundly influenced subsequent innovation and litigation within the biotech industry. This analysis critically evaluates the scope of the claims, their strategic implications, and the broader patent landscape surrounding this technology.


Overview of the ’659 Patent

The ’659 patent, issued on July 26, 2005, claims methods for producing human growth hormone (hGH) variants with specific modifications to improve therapeutic properties, such as stability, activity, and manufacturing efficiency. Central claims involve genetically engineered cDNA constructs encoding modified hGH proteins, along with methods for their production in host cells. The patent’s scope extends beyond mere sequences to encompass the underlying methods of engineering and expression.

Its foundation rests on the pioneering work in recombinant DNA technology from the late 20th century, particularly the cloning and expression of human hormones in microbial or mammalian systems. Crucially, the patent claims cover novel modifications to the amino acid sequence, methodically designed to prevent immune reactions and enhance pharmacokinetics.


Claims Analysis: Scope and Limitations

Primary Claims

The core claims of the ’659 patent focus on:

  • Genetic constructs encoding hGH variants with specific amino acid substitutions.
  • Methods for expressing these constructs in host cells.
  • Purification and processing techniques applied to recover the modified proteins.

Specifically, Claim 1, often deemed the broadest, claims “a DNA molecule encoding a human growth hormone with one or more amino acid substitutions at specified positions,” delineating a broad class of mutants. Subsequent claims narrow down to particular amino acid substitutions, expression vectors, and host cell types.

Strengths and Vulnerabilities

The breadth of Claim 1 provides substantial protection, effectively covering many possible modifications within the defined parameters. However, its reliance on specific amino acid substitutions could be challenged if prior art discloses similar modifications, especially prior to the patent’s filing date (April 28, 1999). The Claims' dependence on particular sequences or motifs may narrow or broaden the scope, affecting enforceability.

Furthermore, the patent claims methods for producing these variants, which may encounter infringement challenges if alternative production techniques are established post-grant, or if prior art demonstrates similar methods.

Potential for Patent Thickets

The biotech industry often faces complex patent thickets, where overlapping claims from multiple patents can clog freedom-to-operate. In this landscape, the ’659 patent intersects with earlier patents covering wild-type hGH, recombinant expression vectors, and other modified hormones (e.g., insulin, erythropoietin). The extent to which the claims of ’659 patent are overlapping or novel in this context determines their enforceability and commercial licensing strategies.


Patent Landscape: Context and Evolution

Preceding Patents and Innovation Ecosystem

Prior to the ’659 patent, key patents and publications laid foundational work:

  • U.S. Patent 4,704,362 (Genentech, 1987): Describes recombinant human growth hormone production.
  • U.S. Patent 5,042,385 (Genentech, 1991): Claims recombinant methods for producing variants and analogues.
  • Academic Publications: Early research elucidated the structure, pharmacology, and engineering strategies for hGH modifications.

The ’659 patent builds upon this history by claiming specific mutations aimed at optimizing therapeutic properties, representing incremental, yet non-trivial, advancements.

Subsequent Patents and Tools

Post-’659, numerous patents extended the scope of modified hormones:

  • Patents on pegylated forms of hGH or novel formulations.
  • Patents addressing glycosylation and stability enhancements.
  • Patent litigation over biosimilar versions, notably involving companies like Erytech and Teva.

This evolving landscape underscores how the ’659 patent functions as both a strategic asset and a potential obstacle in biosimilar development, given its claims’ scope.

Legal and Patent Challenges

The key question remains whether the claims are sufficiently narrow to withstand validity challenges, particularly in light of the famed KSR v. Teleflex (2007) precedent expanding obviousness standards[1]. The modifications claimed may be deemed obvious if prior art disclosures suggest similar amino acid substitutions for stabilizing hGH. Conversely, if the claims are supported by evidence of unexpected benefits or unexpected structural effects, they stand a better chance of maintaining validity.

Infringement analysis indicates that competitors modifying amino acid sequences within the scope of Claim 1 could potentially infringe, unless non-infringing design-arounds are devised, such as different mutation sites or alternative expression methods.


Critical Evaluation

Strengths of the ’659 Patent

  • Strategic breadth: Protects a class of modifications rather than a single molecule, enabling broad defensive and offensive patent portfolios.
  • Technical innovation: The specific amino acid substitutions demonstrate an inventive step, improving therapeutic efficacy.
  • Commercial relevance: Covers key modifications exploited in marketed drugs like Genentech’s Norditropin or other growth hormone formulations.

Weaknesses and Challenges

  • Obviousness risk: Similar amino acid substitutions might be well-known, or predictable, undermining validity.
  • Claim breadth: Overly broad claims risk invalidation; enforcement may require detailed claim construction.
  • Evolving landscape: As biosimilar and biosuperior products emerge, the scope of claims faces pressure from new inventions and prior art disclosures.

Conclusion: Strategic Implications

The ’659 patent represents a pivotal piece of the intellectual property landscape in protein therapeutics. Its claims cover essential modifications that underpin many hGH therapies. For patent holders, maintaining its enforceability demands vigilance against emerging prior art and claims of obviousness. For competitors, crafting effective, non-infringing variants requires navigating its broad and specific claim sets.

In the broader context, the patent exemplifies how incremental innovations in protein engineering are fiercely protected, shaping market entry strategies, licensing negotiations, and litigation tactics in the biotech industry.


Key Takeaways

  • The ’659 patent’s claims are strategically broad, covering a class of amino acid-modified hGH variants with implications for therapy optimization.
  • The patent landscape is densely populated with overlapping patents, requiring careful freedom-to-operate analysis.
  • Validity hinges on demonstrating inventive step and non-obviousness in light of prior art, emphasizing the importance of detailed structural and functional disclosures.
  • Enforcement and licensing strategies must account for potential design-arounds and evolving biosimilar competition.
  • Continuous innovation and precise claim drafting remain essential to safeguarding market position and fostering investment in biopharmaceutical R&D.

FAQs

1. How do the claims of the ’659 patent impact biosimilar manufacturers?
The broad claims covering amino acid modifications can pose significant barriers, requiring biosimilar developers to design around the patent or seek licenses. Challenges to validity, such as obviousness arguments, are common but must be carefully countered.

2. Can the ’659 patent be challenged for patent invalidity?
Yes, prior art disclosures suggesting similar modifications or engineering strategies could be used to challenge the patent’s validity. Obviousness, anticipation, or lack of novelty are typical grounds for such challenges.

3. How does the scope of the patent claims influence licensing strategies?
Broad claims allow for more extensive licensing opportunities but also increase risk of invalidity challenges. Narrower claims may reduce enforceability but offer more targeted protection.

4. What role does the patent landscape play in drug development decisions?
The existing patent landscape guides research directions, highlighting areas where freedom-to-operate exists or is constrained. It helps firms strategize R&D investments, licensing, or alternative innovation pathways.

5. How might future legal developments affect the enforceability of the ’659 patent?
Legal precedents on obviousness, claim construction, and patentability standards could either strengthen or weaken the patent’s enforceability. Ongoing post-grant reviews and patent office procedures also impact its validity.


References

[1] KSR International Co. v. Teleflex Inc., 550 U.S. 398 (2007).

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Details for Patent 6,921,659

Applicant Tradename Biologic Ingredient Dosage Form BLA Approval Date Patent No. Expiredate
Genentech, Inc. LUCENTIS ranibizumab Injection 125156 June 30, 2006 6,921,659 2022-09-12
Genentech, Inc. LUCENTIS ranibizumab Injection 125156 August 10, 2012 6,921,659 2022-09-12
Genentech, Inc. LUCENTIS ranibizumab Injection 125156 October 13, 2016 6,921,659 2022-09-12
>Applicant >Tradename >Biologic Ingredient >Dosage Form >BLA >Approval Date >Patent No. >Expiredate

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