Claims for Patent: 6,130,063

Summary for Patent: 6,130,063

Title:	DNA sequences, vectors, and fusion polypeptides to increase secretion of desired polypeptides from filamentous fungi
Abstract:	The invention includes novel fusion DNA sequences encoding fusion polypeptides which when expressed in a filamentous fungus result in the expression of fusion polypeptides which when secreted result in increased levels of secretion of the desired polypeptide as compared to the expression and secretion of such polypeptides from filamentous fungi transformed with previously used DNA sequences. The fusion DNA sequences comprise from the 5\' terminus four DNA sequences which encode a fusion polypeptide comprising, from the amino to carbonyl-terminus, first, second, third and fourth amino acid sequences. The first DNA sequence encodes a signal peptide functional as a secretory sequence in a first filamentous fungus. The second DNA sequence encodes a secreted polypeptide or portion thereof which is normally secreted from the same filamentous fungus or a second filamentous fungus. The third DNA sequence encodes a cleavable linker polypeptide while the fourth DNA sequence encodes a desired polypeptide. When the fusion DNA sequence is expressed either in the first or second filamentous fungus, increased secretion of the desired polypeptide is obtained as compared to that which is obtained when the desired polypeptide is expressed from DNA sequences encoding a fusion polypeptide which does not contain the second polypeptide normally secreted from either of the filamentous fungi.
Inventor(s):	Lawlis; Virgil Bryan (San Mateo, CA)
Assignee:	Genencor International, Inc. (Palo Alto, CA)
Application Number:	08/828,152
Patent Claims:	1. A fusion DNA sequence encoding a fusion polypeptide comprising, from the 5' end of said fusion DNA sequence, first, second, third and fourth DNA sequences encoding, from the amino- to carboxy-terminus of said fusion polypeptide, corresponding first, second, third and fourth amino acid sequences, said first DNA sequence encoding a signal peptide functional as a secretory sequence in a first filamentous fungus, said second DNA sequence encoding a secreted polypeptide or portion thereof, said third DNA sequence encoding a cleavable linker polypeptide and said fourth DNA sequence encoding a desired polypeptide, wherein the expression of said fusion DNA sequence in said first filamentous fungus or in a second filamentous fungus results in increased secretion of said desired polypeptide as compared to the secretion of said desired polypeptide from said first or said second filamentous fungus when expressed as a second fusion polypeptide encoded by a second fusion DNA sequence comprising only said first, third and fourth DNA sequences. 2. The fusion DNA sequence of claim 1 wherein said first DNA sequence encodes a signal peptide selected from the group consisting of signal peptides from glucoamylase, .alpha.-amylase, and aspartyl protease from Aspergillus species, signal peptides from bovine chymosin and human tissue plasminogen activator and signal peptides from Trichoderma cellobiohydrolase I and II. 3. The fusion DNA sequence of claim 1 wherein said first DNA sequence encodes the signal peptide from Asperaillus awamori glucoamylase. 4. The fusion DNA sequence of claim 1 wherein said second DNA sequence encodes a secreted polypeptide or a portion thereof selected from the group consisting of glucoamylase, .alpha.-amylase, and aspartyl protease from Aspergillus species and Trichoderma cellobiohydrolase I and II. 5. The fusion DNA sequence of claim 1 wherein said second DNA sequence encodes glucoamylase from Aspergillus awamori or a portion thereof. 6. The fusion DNA sequence of claim 1 wherein said third DNA sequence encodes a cleavable linker polypeptide selected from the group consisting of the prosequence from chymosin, the prosequence of subtilisin, and sequences recognized by trypsin factor X.sub.a, collagenase, clostripain, subtilisin and chymosin. 7. The DNA sequence of claim 1 wherein said third DNA sequence encodes the prosequence of chymosin or a portion thereof. 8. The fusion DNA sequence of claim 1 wherein said fourth DNA sequence encodes a desired polypeptide selected from the group consisting of enzymes, proteinaceous hormones and serum proteins. 9. The fusion DNA sequence of claim 1 wherein said fourth DNA sequence encodes bovine chymosin. 10. The fusion DNA sequence of claim 1 wherein said first DNA sequence encodes the signal peptide from Aspergillus awamori glucoamylase, said second sequence encodes glucoamylase from Aspergillus awamori said third sequence encodes the prosequence of chymosin and said fourth sequence encodes chymosin. 11. An expression vector for transforming a host filamentous fungus comprising DNA sequences encoding regulatory sequences functionally recognized by said host filamentous fungus including promoter and transcription and translation initiation sequences operably linked to the 5' end of the fusion DNA sequence of claim 1 and transcription stop sequences and polyadenylation sequences operably linked to the 3' end of said fusion DNA sequence. 12. The expression vector of claim 11 wherein said first and said second DNA sequences encoding respectively said signal peptide and said secreted polypeptide are selected from filamentous fungi of the same genus as said host filamentous fungus. 13. The expression vector of claim 12 wherein said genus is selected from the group consisting of Aspergillus, Trichoderma, Neurospora, Penicillium, Cephalosporium, Podospora, Endothia, Mucor, Cochliobolus, Pyricularia, Achlya and Humicola. 14. The expression vector of claim 12 wherein said genus is Aspergillus. 15. The expression vector of claim 11 wherein said first and said second DNA sequences encoding respectively said signal peptide and said secreted polypeptide are from said host filamentous fungus. 16. A filamentous fungus comprising an expression vector, said expression vector as in one of claims 11-15. 17. A fusion polypeptide comprising, from the amino- to carboxy-terminus, first, second, third and fourth amino acid sequences, said first amino acid sequence comprising a signal peptide functional as a secretory sequence in a first filamentous fungus, said second amino acid sequence comprising a secreted polypeptide or portion thereof, said third amino acid sequence comprising a cleavable linker polypeptide and said fourth amino acid sequence comprising a desired polypeptide, wherein the expression of a fusion DNA sequence encoding said fusion polypeptide in said first filamentous fungus or in a second filamentous fungus results in increased secretion of said desired polypeptide as compared to the secretion of said desired polypeptide from said first or said second filamentous fungus when expressed from a second fusion DNA sequence encoding a second fusion polypeptide comprising only said first, third and fourth amino acid sequences. 18. The fusion polypeptide of claim 17 wherein said first amino acid sequence comprises a signal peptide selected from the group consisting of signal peptides from glucoamylase, .alpha.-amylase, and aspartyl protease from Aspergillus species, signal peptides from bovine chymosin and human tissue plasminogen activator and signal peptides from Trichoderma cellobiohydrolase I and II. 19. The fusion polypeptide of claim 17 wherein said first amino acid sequence is the signal peptide from Asperaillus awamori glucoamylase. 20. The fusion polypeptide of claim 17 wherein said second amino acid sequence is selected from the group consisting of glucoamylase, .alpha.-amylase, and aspartyl protease from Aspergillus species and Trichoderma cellobiohydrolase I and II. 21. The fusion polypeptide of claim 17 wherein said second amino acid sequence is glucoamylase from Aspergillus awamori. 22. The fusion polypeptide of claim 1 wherein said cleavable linker polypeptide is selected from the group consisting of the prosequence of subtilisin, and sequences recognized by trypsin factor X.sub.a, collagenase, clostripain, subtilisin and chymosin. 23. The fusion polypeptide of claim 17 wherein said third amino acid sequence is the prosequence of chymosin. 24. The fusion polypeptide of claim 17 wherein said fourth amino acid sequence is selected from the group consisting of enzymes, proteinaceous hormones and serum proteins. 25. The fusion polypeptide of claim 17 wherein said fourth amino acid sequence is chymosin. 26. The fusion polypeptide of claim 17 wherein said first amino acid sequence is the signal peptide of A. awamori glucoamylase, said third amino acid sequence is the prosequence of chymosin and said fourth amino acid sequence is bovine chymosin. 27. A process for producing a desired polypeptide comprising: culturing a host filamentous fungus transformed with an expression vector comprising the fusion DNA sequence of claim 1 under conditions which permit expression of said fusion DNA sequence to cause the secretion of the desired polypeptide encoded by said fusion DNA sequence. 28. A process according to claim 27, wherein said first DNA sequence encodes a signal peptide selected from the group consisting of signal peptides from glucoamylase, .alpha.-amylase, and aspartyl protease from Aspergillus species, signal peptides from bovine chymosin and human tissue plasminogen activator and signal peptides from Trichoderma cellobiohydrolase I and II. 29. A process according to claim 27, wherein said first DNA sequence encodes a signal peptide from Aspergillus awamori glucoamylase. 30. A process according to claim 27, wherein said second DNA sequence encodes a secreted polypeptide or a portion thereof selected from the group consisting of glucoamylase, .alpha.-amylase, and aspartyl protease from Aspergillus species and Trichoderma cellobiohydrolase I and II. 31. A process according to claim 27, wherein said second DNA sequence encodes glucoamylase from Aspergillus awamori or a portion thereof. 32. A process according to claim 27, wherein said third DNA sequence encodes a cleavable linker polypeptide selected from the group consisting of the prosequence from chymosin, the prosequence of subtilisin, and sequences recognized by trypsin factor X.sub.a, collagenase, clostripain, subtilisin and chymosin. 33. A process according to claim 27, wherein said third DNA sequence encodes the prosequence of chymosin or a portion thereof. 34. A process according to claim 27, wherein said fourth DNA sequence encodes a desired polypeptide selected from the group consisting of enzymes, proteinaceous hormones and serum proteins. 35. A process according to claim 27, wherein said fourth DNA sequence encodes bovine chymosin. 36. A process according to claim 27, wherein said first DNA sequence encodes the signal peptide from Aspergillus awamori glucoamylase, said second sequence encodes glucoamylase from Aspergillus awamori, said third sequence encodes the prosequence of chymosin and said fourth sequence encodes chymosin. 37. A process according to claim 27, wherein said expression vector comprises DNA sequences encoding regulatory sequences functionally recognized by said host filamentous fungus including promoter and transcription and translation initiation sequences operably linked to the 5' end of said fusion DNA sequence and transcription stop sequences and polyadenylation sequences operably linked to the 3' end of said fusion DNA sequence. 38. A process according to claim 27, wherein said signal peptide and said secreted polypeptide are selected from filamentous fungi of the same genus as said host filamentous fungus. 39. A process according to claim 38, wherein said genus is selected from the group consisting of Aspergillus, Trichoderma, Neurospora, Penicillium, Cephalosporium, Podospora, Endothia, Mucor, Cochliobolus, Pyricularia, Achlya and Humicola. 40. A process according to claim 38, wherein said genus is Aspergillus. 41. A process according to claim 38, wherein said first and said second DNA sequences encoding respectively said signal peptide and said secreted polypeptide are from said host filamentous fungus.

Details for Patent 6,130,063

Applicant	Tradename	Biologic Ingredient	Dosage Form	BLA	Approval Date	Patent No.	Expiredate
Smith & Nephew, Inc.	SANTYL	collagenase	Ointment	101995	06/04/1965		2005-08-29