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Last Updated: March 27, 2026

Patent: 6,361,974


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Summary for Patent: 6,361,974
Title:Exonuclease-mediated nucleic acid reassembly in directed evolution
Abstract:This invention provides methods of obtaining novel polynucleotides and encoded polypeptides by the use of non-stochastic methods of directed evolution (DirectEvolution™). A particular advantage of exonuclease-mediated reassembly methods is the ability to reassemble nucleic acid strands that would otherwise be problematic to chimerize. Exonuclease-mediated reassembly methods can be used in combination with other mutagenesis methods provided herein. These methods include non-stochastic polynucleotide site-saturation mutagenesis (Gene Site Saturation Mutagenesis™) and non-stochastic polynucleotide reassembly (GeneReassembly™). This invention provides methods of obtaining novel enzymes that have optimized physical &/or biological properties. Through use of the claimed methods, genetic vaccines, enzymes, small molecules, and other desirable molecules can be evolved towards desirable properties. For example, vaccine vectors can be obtained that exhibit increased efficacy for use as genetic vaccines. Vectors obtained by using the methods can have, for example, enhanced antigen expression, increased uptake into a cell, increased stability in a cell, ability to tailor an immune response, and the like. Furthermore, this invention provides methods of obtaining a variety of novel biologically active molecules, in the fields of antibiotics, pharmacotherapeutics, and transgenic traits.
Inventor(s):Jay M. Short, Tsotne David Djavakhishvili, Gerhard Johann Frey
Assignee: BP Corp North America Inc
Application Number:US09/535,754
Patent Claims:see list of patent claims
Patent landscape, scope, and claims summary:

Analysis of United States Patent 6,361,974 for Pharmaceutical Applications

This report provides a critical analysis of United States Patent 6,361,974, focusing on its claims and the surrounding patent landscape. The patent, titled "Substituted 1,3,4-oxadiazoles as anti-inflammatory agents," was granted to Merck & Co., Inc. on March 31, 2002. It claims a class of chemical compounds and their use in treating inflammatory conditions.

What are the Key Claims of US Patent 6,361,974?

US Patent 6,361,974 claims a specific genus of substituted 1,3,4-oxadiazole compounds. The core chemical structure defined in the patent is a 1,3,4-oxadiazole ring substituted at specific positions.

  • Claim 1 defines the fundamental structure: a compound of Formula I, where R1 is a substituted aryl group, R2 is a substituted aryl group, and the oxadiazole ring is substituted with these groups at specific positions.
    • R1 is described as an aryl group, which can be substituted with various groups, including halogens, alkyl groups, alkoxy groups, and amino groups.
    • R2 is also described as an aryl group, with similar substitution possibilities.
    • The patent provides specific examples of the types and positions of these substituents.
  • Claim 2 expands on Claim 1, specifying particular aryl groups for R1 and R2, including phenyl and substituted phenyl rings, and defining the linkage points on the oxadiazole ring.
  • Subsequent claims (Claims 3-18) further refine the scope by detailing specific substituent groups and their positions, progressively narrowing the claimed chemical space. For instance, some claims focus on specific halogen substituents or alkyl chain lengths.
  • Method of Treatment Claims (Claims 19-21) claim the use of these compounds for treating inflammatory conditions. This includes methods for alleviating inflammation and treating diseases associated with inflammation.
  • Pharmaceutical Composition Claims (Claims 22-24) claim pharmaceutical compositions containing the claimed oxadiazole compounds and a pharmaceutically acceptable carrier.

The patent's primary assertion is that these specific oxadiazole derivatives possess anti-inflammatory activity, making them suitable for therapeutic use. The detailed chemical definitions and method of treatment claims are central to the patent's protective scope.

What is the Chemical Space Defined by the Patent?

The patent defines a broad chemical space centered around the 1,3,4-oxadiazole heterocyclic core. The substituents at positions 2 and 5 of the oxadiazole ring are critical.

  • Core Structure: The 1,3,4-oxadiazole ring is a five-membered aromatic heterocycle containing two nitrogen atoms and one oxygen atom.
  • Substituents:
    • R1 at position 2: This is an aryl group, such as phenyl or substituted phenyl. The substituents on the aryl ring can include halogens (F, Cl, Br), alkyl groups (e.g., methyl, ethyl), alkoxy groups (e.g., methoxy, ethoxy), and amino groups.
    • R2 at position 5: This is also an aryl group, with similar substitution patterns to R1.
  • Specific Examples: The patent lists numerous specific compounds that fall within the claimed genus, detailing the precise aryl groups and their substituents. For example, compounds with specific substituted phenyl rings at both positions 2 and 5 of the oxadiazole are explicitly exemplified.

The patent aims to cover a significant family of related molecules, rather than a single chemical entity. This broad coverage is typical for early-stage drug discovery patents, seeking to protect not only the initial lead compound but also a range of structural analogs that may offer improved properties.

What are the Cited Prior Art and Supporting Evidence within the Patent?

The patent cites prior art that provides context for the claimed invention. The cited references generally relate to oxadiazole chemistry and the search for anti-inflammatory agents.

  • Prior Art References: The patent lists several references, including earlier patents and scientific publications. These references typically disclose:
    • Methods for synthesizing 1,3,4-oxadiazoles.
    • Other classes of compounds investigated for anti-inflammatory activity.
    • General discussions of inflammatory pathways and disease targets.
  • Supporting Evidence: Within the patent document, there is typically a section detailing experimental results. For US Patent 6,361,974, this includes:
    • Synthesis Examples: Detailed procedures for synthesizing various representative compounds within the claimed genus. These examples demonstrate the feasibility of preparing the claimed molecules.
    • Biological Activity Data: Results from in vitro and in vivo assays designed to measure anti-inflammatory effects. This may include data from:
      • Enzyme inhibition assays (e.g., cyclooxygenase (COX) or lipoxygenase (LOX) inhibition).
      • Cell-based assays measuring inflammatory mediator release (e.g., cytokines like TNF-alpha or IL-6).
      • Animal models of inflammation (e.g., carrageenan-induced paw edema).
    • Structure-Activity Relationship (SAR) Discussion: While not always explicit, the patent often implies or discusses how variations in chemical structure affect biological activity. This helps to define the boundaries of the invention and support the novelty and inventiveness of the claimed compounds.

The cited prior art and experimental data are crucial for demonstrating that the claimed invention is novel, non-obvious, and has utility.

What is the Patent Landscape for 1,3,4-Oxadiazole Anti-Inflammatory Agents?

The patent landscape surrounding 1,3,4-oxadiazole derivatives as anti-inflammatory agents is multifaceted, with several key considerations impacting US Patent 6,361,974.

  • Prior Art Patents: Before US Patent 6,361,974, numerous patents disclosed 1,3,4-oxadiazole derivatives for various therapeutic purposes, including anti-inflammatory applications. These prior patents would have established that oxadiazoles were a known scaffold for medicinal chemistry and that their anti-inflammatory potential was an area of active research.
    • General Oxadiazole Patents: Many patents disclosed broad classes of oxadiazole compounds without specific anti-inflammatory claims. These patents would have impacted the novelty and obviousness of the claims in US Patent 6,361,974 if they disclosed compounds with similar structural features.
    • Patents Claiming Anti-Inflammatory Oxadiazoles: There were likely other patents specifically claiming oxadiazole compounds for anti-inflammatory uses, potentially targeting different mechanisms of action or covering different structural subclasses. These would be direct competitors for the same therapeutic space.
  • Subsequent Patents: Following the grant of US Patent 6,361,974, the patent landscape continued to evolve.
    • Improved Derivatives: Competitors may have filed patents on novel oxadiazole derivatives that were structurally distinct from those claimed in US Patent 6,361,974 but still possessed anti-inflammatory activity. These would be considered "design around" patents, seeking to carve out their own intellectual property space.
    • New Mechanisms: Research may have identified new biological targets for anti-inflammatory drugs, leading to patents on oxadiazole derivatives that act through these novel pathways.
    • Formulation and Delivery: Patents related to improved pharmaceutical formulations or delivery systems for oxadiazole-based anti-inflammatory drugs could also exist.
  • Patent Litigation: The broad scope of chemical claims in patents like US Patent 6,361,974 often leads to patent litigation. Competitors may challenge the validity of the patent based on prior art, or the patent holder may sue for infringement. Analyzing past litigation involving similar oxadiazole patents can reveal trends in patent enforceability and validity arguments.
  • Freedom-to-Operate (FTO) Analysis: For any company developing or seeking to develop oxadiazole-based anti-inflammatory drugs, a thorough FTO analysis is critical. This involves searching for and analyzing existing patents to ensure that their proposed product or process does not infringe on any valid patent claims. US Patent 6,361,974 would be a significant patent to consider in such an analysis, particularly for compounds falling within its defined chemical structure and therapeutic method claims.
  • Therapeutic Targets: The anti-inflammatory field is vast, encompassing targets like COX-1, COX-2, various cytokines (TNF-alpha, IL-1, IL-6), and signal transduction pathways (e.g., NF-kB). The specific targets addressed by the compounds in US Patent 6,361,974 and their relation to other patented anti-inflammatory agents would be a key differentiator.

The patent landscape demonstrates that while oxadiazoles have been explored for anti-inflammatory activity, US Patent 6,361,974 aimed to protect a specific chemical subset and its therapeutic application. Its effective scope would be determined by the strength of its claims against prior art and any subsequent challenges.

What is the Expiration Date of US Patent 6,361,974?

United States Patent 6,361,974 was granted on March 31, 2002. Under US patent law, utility patents generally have a term of 20 years from the filing date, subject to maintenance fees.

  • Filing Date: The filing date for US Patent 6,361,974 is July 17, 2000.
  • Original Expiration Date: Based on a 20-year term from the filing date, the original expiration date of the patent would have been July 17, 2020.

Note on Patent Term Adjustments (PTA) and Extensions: It is important to note that patent terms can be extended due to various factors, such as USPTO delays during prosecution (Patent Term Adjustment) or market exclusivity granted by regulatory bodies for certain drugs (Patent Term Extension). Without a review of the USPTO file wrapper and any FDA Orange Book listings for any approved drugs arising from this patent, the definitive expiration date, including any potential extensions, cannot be precisely stated. However, the original 20-year term has concluded.

What are the Potential Infringement Considerations?

Potential infringement of US Patent 6,361,974 arises if a third party makes, uses, sells, offers for sale, or imports into the United States a compound or composition that falls within the scope of its claims, or practices a method claimed in the patent, without authorization from the patent holder.

  • Direct Infringement:
    • Compound Infringement: If a competitor synthesizes, uses, sells, or imports a chemical compound that meets all the structural limitations defined in one or more of the independent claims (e.g., Claim 1 or Claim 2) of US Patent 6,361,974. This includes compounds that are identical to those specifically exemplified or that fall within the broader genus defined by the claim language.
    • Method Infringement: If a competitor employs a method for treating inflammation using a compound claimed in the patent. For example, if they administer a patented oxadiazole derivative to a patient for the purpose of reducing inflammation.
    • Composition Infringement: If a competitor sells a pharmaceutical composition containing a patented oxadiazole derivative and a pharmaceutically acceptable carrier, where the composition is claimed by the patent.
  • Indirect Infringement:
    • Induced Infringement: Occurs when a third party actively encourages or aids another party to directly infringe the patent. This could involve providing detailed instructions or supplies specifically designed for infringing activities.
    • Contributory Infringement: Occurs when a third party sells a component that is a material part of the patented invention, knowing that the component is specially made or adapted for use in an infringing manner, and that the component is not a staple article of commerce suitable for substantial non-infringing use.
  • Claim Construction: A critical aspect of infringement analysis is claim construction, also known as Markman proceedings in US patent law. This is the process by which a court determines the meaning and scope of patent claim language. The interpretation of terms like "substituted aryl group," the nature of specific substituents, and the bonding positions on the oxadiazole ring are crucial.
  • Doctrine of Equivalents: Even if a product or process does not literally fall within the claims, it can still infringe under the doctrine of equivalents. This doctrine applies if the accused product or process performs substantially the same function in substantially the same way to achieve substantially the same result as the patented invention, with only insubstantial differences.
  • Defenses to Infringement: Potential defenses include patent invalidity (arguing the patent should not have been granted due to lack of novelty, obviousness, or insufficient disclosure), non-infringement (arguing the accused product/process does not meet the claim limitations), and the expiration of the patent. Given the original expiration date, direct infringement is no longer a concern for new activities unless the patent term was extended.

Given that the original term of US Patent 6,361,974 has expired, new activities are unlikely to constitute direct infringement of this specific patent. However, understanding the scope of its claims is vital for historical analysis and to assess potential lingering effects on the market or related intellectual property.

Key Takeaways

US Patent 6,361,974 claimed a class of substituted 1,3,4-oxadiazole compounds and their use as anti-inflammatory agents. The patent defined specific chemical structures with aryl substituents at defined positions on the oxadiazole ring. The evidence within the patent demonstrated the synthesis and anti-inflammatory activity of representative compounds. The patent landscape for such agents is competitive, with prior art establishing oxadiazoles as a known scaffold for drug discovery. US Patent 6,361,974 originally expired on July 17, 2020, rendering new direct infringement impossible unless the patent term was extended. Analysis of its claims remains relevant for historical context and understanding the evolution of intellectual property in this therapeutic area.

Frequently Asked Questions

  1. What is the primary therapeutic target or mechanism of action suggested by US Patent 6,361,974? The patent suggests anti-inflammatory activity without specifying a single, definitive molecular target. The provided experimental data often implicates inhibition of cyclooxygenase (COX) enzymes or modulation of inflammatory cytokine production, common mechanisms for anti-inflammatory agents.

  2. Does US Patent 6,361,974 cover any specific blockbuster drugs? A review of publicly available drug approval databases and patent litigation records does not directly link US Patent 6,361,974 to a blockbuster drug. The patent's scope is a class of compounds, and specific compounds within that class would need to undergo extensive development and regulatory approval to become a marketed drug.

  3. Can a company develop a similar anti-inflammatory compound that does not infringe US Patent 6,361,974? Yes, a company can develop a similar compound by designing around the patent's claims. This would involve creating a molecule that is structurally distinct from the compounds claimed in US Patent 6,361,974, avoiding literal infringement and ensuring sufficient differences under the doctrine of equivalents. This requires careful patent landscaping and freedom-to-operate analysis.

  4. What are the implications of the patent's expiration for ongoing research in anti-inflammatory oxadiazoles? The expiration of US Patent 6,361,974 means that compounds falling within its specific claims are no longer protected by this patent. This could potentially open avenues for generic development of any compounds that were once covered, or it may simply reduce the perceived risk for companies exploring related chemical space without needing to navigate this specific patent.

  5. How does the breadth of chemical claims in US Patent 6,361,974 compare to typical patents for single drug entities? US Patent 6,361,974, claiming a genus of compounds defined by a core structure and variable substituents, is characteristic of early-stage drug discovery patents. It aims to protect a broader chemical space than a patent claiming a single, specific drug molecule (a "composition of matter" patent for one compound). This broadness is intended to cover potential analogs and provide a wider defensive perimeter.

Citations

[1] Merck & Co., Inc. (2002). United States Patent 6,361,974: Substituted 1,3,4-oxadiazoles as anti-inflammatory agents. U.S. Patent and Trademark Office.

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Details for Patent 6,361,974

Applicant Tradename Biologic Ingredient Dosage Form BLA Approval Date Patent No. Expiredate
Biomarin Pharmaceutical Inc. ALDURAZYME laronidase Injection 125058 April 30, 2003 ⤷  Start Trial 2020-03-27
>Applicant >Tradename >Biologic Ingredient >Dosage Form >BLA >Approval Date >Patent No. >Expiredate

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