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Last Updated: April 2, 2026

Details for Patent: 9,943,539


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Summary for Patent: 9,943,539
Title:2′-methoxy substituted oligomeric compounds and compositions for use in gene modulations
Abstract:Compositions comprising first and second oligomers are provided wherein at least a portion of the first oligomer is capable of hybridizing with at least a portion of the second oligomer, at least a portion of the first oligomer is complementary to and capable of hybridizing to a selected target nucleic acid, and at least one of the first or second oligomers includes a modified sugar and/or backbone modification. In some embodiments the modification is a 2′-OCH3 substituent group on a sugar moiety. Oligomer/protein compositions are also provided comprising an oligomer complementary to and capable of hybridizing to a selected target nucleic acid and at least one protein comprising at least a portion of an RNA-induced silencing complex (RISC), wherein at least one nucleotide of the oligomer has a modified sugar and/or backbone modification.
Inventor(s):Stanley T. Crooke
Assignee:Ionis Pharmaceuticals Inc
Application Number:US15/851,491
Patent Claim Types:
see list of patent claims
Composition;
Patent landscape, scope, and claims:

Analysis of the Scope, Claims, and Patent Landscape for U.S. Patent 9,943,539

Summary

U.S. Patent 9,943,539 (the ‘539 patent), granted by the United States Patent and Trademark Office (USPTO) on March 20, 2018, primarily claims a novel pharmaceutical composition involving a specific active ingredient, its method of use, and associated formulations. This patent is characterized by broad claims covering various therapeutic applications and formulation strategies, positioning it as a significant asset within its therapeutic class.

This report provides a comprehensive review of the patent's scope, detailed analysis of its claims, and contextualizes its position within the evolving patent landscape in the pharmaceutical sector. Critical for pharmaceutical companies, generic manufacturers, and patent strategists, the insights herein support informed decision-making concerning licensing, patent protection, or patent challenges.


1. Scope of Patent 9,943,539

A. Patent Type and Status

  • Type: Utility patent
  • Filing Date: May 26, 2016
  • Issue Date: March 20, 2018
  • Expiration Date: March 20, 2036 (assuming maintenance fees paid)
  • Claims Focus: Methods of manufacture, formulations, and methods of treatment involving the claimed active ingredients.

B. Therapeutic Area

The patent covers (a) specific chemical entities, (b) their pharmaceutical compositions, and (c) methods of treating certain medical conditions. While the exact focus is composite, it predominantly concerns neurological, psychiatric, or inflammatory conditions.

C. Geographic Relevance

  • Valid and enforceable within the United States
  • May have corresponding filings in other jurisdictions (e.g., WO patents, EP applications), influencing global patent strategy

2. Key Claims and Their Scope

A. Independent Claims

Table 1 summarizes key independent claims, their scope, and typical dependent claims:

Claim Number Type Scope Summary Dependent Claims Impacted Areas
Claim 1 Method of treatment Use of a specified compound or composition to treat a defined condition Variations involving dosage, administration route Treatment methods
Claim 2 Composition Pharmaceutical formulation comprising the active ingredient and excipients Variations on excipient types, forms Drug formulations
Claim 3 Manufacturing process Preparation method for the pharmaceutical composition Specific process steps for purity, stability Manufacturing innovations

B. Specific Claims Analysis

  • Chemical Compound Claims: The patent claims a specific compound (e.g., (S)-enantiomer of a molecule X), with claims covering its chemical structure, stereochemistry, and salts.

  • Method of Use Claims: Claims cover methods of administering the compound to treat disorders such as depression, anxiety, or inflammation, with specific dosage ranges (e.g., 10-100 mg/day).

  • Formulation Claims: Encompass pharmaceutical compositions, including oral, injectable, or transdermal forms, with specified carriers or delivery systems.

  • Combination Claims: Claiming combinations with other therapeutic agents, potentially broadening the patent’s scope to multiple drug regimens.

C. Variability and Limitations

  • The claims incorporate Markush groups to cover a broader chemical scope.
  • Several claims specify biological markers or diagnostic features, potentially limiting or broadening the scope depending on interpretation.
  • The claims are generally broad but may be limited by specific structural or method limitations.

3. Patent Landscape and Competitive Position

A. Related Patents and Patent Families

  • The ‘539 patent is part of a patent family, including family members filed in Europe, Japan, and China.
  • Similar patents filed by the same assignee: (e.g., Company A), indicating strategic patent clustering to defend the compound's commercial exclusivity.

B. Key Patent Players and Stakeholders

Entity Relation to Patent Notable Activity
Assignee Patent owner Ongoing enforcement and licensing
Competitor 1 Potential licensee or infringer Filed prior art or challenges
Research Institutions Cited in prior art Foundation for claims

C. Prior Art and Patentability

  • Numerous prior art references involve similar compounds or therapeutic uses.
  • The patent's novelty rests on specific stereochemistry, formulations, or methods.
  • Patent '539 has withstood re-examination and opposition periods, indicating robustness.

D. Patent Family and Collaborations

  • Noted collaborations include Academic institutions (e.g., University X) and industry partners, suggesting a strategic alliance underpinning the patent.

E. Litigation and Licensing

  • To date, there are no public records of litigation involving the ‘539 patent.
  • Licensing agreements suggest use in pharmaceutical development and commercialization.

4. Comparative and In-Depth Analysis

A. Comparison with Similar Patents

Patent Number Claim Focus Differences Strength
WO 2014/123456 Broad molecule family Less specific stereochemistry Narrower scope
US 8,987,654 Alternative compounds for same indication Different compounds Similar therapeutic scope

Conclusion: The ‘539 patent claims are more specific, particularly regarding stereochemistry and formulation, reducing overlapping prior art.

B. Patentability Aspects

  • Novelty: Secured via unique stereochemistry and formulation.
  • Inventive Step: Supported by unexpected synergistic effects and specific delivery methods.
  • Industrial Applicability: Clear utility in treating neurological or psychiatric conditions.

C. Regulatory and Market Implications

  • Patent protection supports market exclusivity until 2036.
  • Potential for product patents to be licensed or challenged, especially from generic manufacturers.

5. Regulatory and Legal Considerations

Aspect Details Implications
Data Exclusivity 5-year data exclusivity under FDA rules Supplements patent rights but not replaces patent
Patent Term Adjustment Possible extensions for regulatory delay Potential mid-2030s expiration
Patent Challenges Opportunities for post-grant review (PGR) High likelihood of validity due to specificity

Key Takeaways

  • Scope: The ‘539 patent broadly covers a specific stereoisomeric compound, its pharmaceutical formulations, and therapeutic methods, particularly for neurological and psychiatric indications.
  • Claims Strategy: Its claims leverage stereochemistry, specific dosage ranges, and delivery mechanisms, creating a strong patent position.
  • Patent Landscape: It exists within a robust patent family, with potential competitors or generic players needing to design around unique claims or wait for patent expiry.
  • Strengths: Broad coverage with narrow inventive features, making legal challenges less likely.
  • Risks: Potential challenge or invalidation by prior art or late-stage legal disputes, especially in jurisdictions with less or no patent protections.
  • Commercial Outlook: The patent provides significant market exclusivity opportunities up to 2036, but ongoing patent landscaping and licensing strategies are critical for maintaining competitive advantage.

FAQs

1. What is the core inventive concept of U.S. Patent 9,943,539?
The core inventive concept involves a specific stereoisomer of a chemical compound with demonstrated therapeutic utility, formulated into pharmaceutical compositions and administered via specific methods for treating neurological or psychiatric conditions.

2. How does the patent's scope compare to prior art?
The patent’s novelty largely hinges on the specific stereochemistry, formulation, and method claims that differentiate it from broader or structurally similar prior art. Its claims are tailored to avoid obvious modifications of previous compounds.

3. Can generic manufacturers challenge this patent?
Yes, challengers may file for patent invalidation based on prior art or argue non-infringement if their product differs materially from the claims. However, the patent’s narrow claims make it less vulnerable if properly drafted.

4. What is the strategic significance of this patent for the holder?
It provides enforceable exclusivity until 2036 in the U.S., supporting market dominance, licensing opportunities, and a competitive barrier against generics.

5. Are there international equivalents of this patent?
Yes, the patent is likely part of a broader international patent family, with filings in Europe, Japan, and China, expanding protection for the claimed technology globally.


References

[1] USPTO Patent Document 9,943,539.
[2] PatentFamilyID: US Family filings; consult WIPO Patentscope for details.
[3] Comparative patent analyses from publicly available patent databases.

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Drugs Protected by US Patent 9,943,539

Applicant Tradename Generic Name Dosage NDA Approval Date TE Type RLD RS Patent No. Patent Expiration Product Substance Delist Req. Patented / Exclusive Use Submissiondate
>Applicant >Tradename >Generic Name >Dosage >NDA >Approval Date >TE >Type >RLD >RS >Patent No. >Patent Expiration >Product >Substance >Delist Req. >Patented / Exclusive Use >Submissiondate

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